#bioinformatics

A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.

An AI-native molecular biology workbench for Claude Science: Claude opens sequence files and prepares analyses on request; you annotate, align, and review them in an interactive workspace.

Agent Skills for small-molecule and protein therapeutics: cheminformatics, molecular ML, docking and dynamics, protein design platforms, and target-discovery knowledge graphs.

Interpretable ranking and layered screening for generated protein backbone candidates.

Standard to define citable scientific protocols for use by AI agents

Cellular agriculture × AI: end-to-end Claude Agent SDK app that composes cell-culture media (Sardine framework) and validates against CHO genome-scale metabolic models + readouts (Hamster framework) in one loop. 10 custom tools: KEGG, Ensembl, EuropePMC, arXiv, BiGG, ChEBI, caail, yields calculator, notes r/w.

Connect whole-genome sequencing data to AI coding assistants via the Model Context Protocol (MCP). Setup guides for GeneChat-MCP, OpenCRAVAT-MCP, and Pomera across Antigravity, Codex, and Claude Code.

Executable biomedical workflows for AI assistants — literature analysis, biomarker discovery, and Mendelian randomization through reproducible agent skills.

race a noncoding disease variant to the transcription-factor motif it disrupts — from DNA sequence — using ChromBPNet, in-silico mutagenesis, and JASPAR. Built with Claude Science for the Life Sciences hackathon.

Skills, hooks, and CLI checks for safer biomedical AI coding agents.

ScholarFlow Skills by Zhoy: reusable Agent Skills for literature review, academic writing, figures, bioinformatics, and research deliverables.

Static landing site for Motif, a molecular-biology workbench for Claude Science.

AI-assisted molecular tumor board for community cancer centers: NGS → per-patient report, per-gene PICO/PRISMA/GRADE literature appraisal, and a board-ready case deck. React + Cloudflare Pages + Anthropic.

An agent skill for quality-controlling FASTQ sequencing reads.